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	Software	Version
RNA-seq	HISAT2	2.0.5
	SAMtools	0.1.18
	StringTie	1.3.6
	R	3.2.2
miRNA-seq	Cutadapt	1.8.dev0
	miRDeep2	0.1.2
	R	3.2.2
circRNA	CIRIquant	1.1.1
	Find_circ	2
	R	4.1.1
ATAC-seq	Bowtie2	2.3.5.1
	SAMtools	0.1.18
	Picard	2.25.7
	MACS2	2.2.6
	SnpEff	4.2
	deepTools	3.5.1
	bedGraphToBigWig	4
Bisulfite-seq	Bismark	0.23.0
	Bowtie2	2.1.0
	SnpEff	4.2
	bedGraphToBigWig	4
ChIP-seq	Bowtie2	2.3.5.1
	SAMtools	0.1.18
	Picard	2.25.7
	MACS2	2.2.6
	SnpEff	4.2
	deepTools	3.5.1
	bedGraphToBigWig	4
MeRIP-seq	HISAT2	2.0.5
	SAMtools	0.1.18
	Picard	2.25.7
	R	4.1.1
	exomePeak2	2
	SnpEff	4.2
	deepTools	3.5.1
	bedGraphToBigWig	4
SNP Variation	BWA	0.7.17
	Picard	2.25.7
	SAMtools	0.1.18
	GATK	4.1.5.0
	SnpEff	4.3u
	VCFtools	0.1.16
	BCFtools	1.9

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